Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs111885088 chr12:56657216 A/C 1.08E-7 177 25.35 26.37 0.8 KM Plot
PCPG rs111899361 chr7:1112348 C/T 0.000233 176 25.87 24.5 49.58 KM Plot
PCPG rs111955762 chr16:1664041 T/C 1.56E-11 173 25 30.25 4.52 KM Plot
PCPG rs112034319 chr21:38449248 G/A 5.33E-6 176 25 25.87 3.7 KM Plot
PCPG rs11206673 chr1:56326340 C/T 1.46E-6 178 17.93 16.6 27.2 KM Plot
PCPG rs11206677 chr1:56335237 C/A 2.0E-7 174 25.53 25.77 13.27 KM Plot
PCPG rs112071133 chr11:43424629 TAAAG/T 0.00025 175 25.08 24.97 27.6 KM Plot
PCPG rs112071784 chr8:140987876 CTCAT/C 1.11E-16 172 25.28 37.87 3.17 KM Plot
PCPG rs112080769 chr16:71816369 A/AATT 1.21E-5 173 24.47 30.93 14.5 KM Plot
PCPG rs11211258 chr1:46624627 C/T 0.000185 171 24.62 25.87 22.22 KM Plot
PCPG rs112137398 chr9:86644955 C/T 1.07E-5 173 26.22 23.83 10.3 KM Plot
PCPG rs11214498 chr11:112983622 G/A 0.000206 173 25.87 19.72 34.38 KM Plot
PCPG rs11214499 chr11:112983623 A/C 0.000206 173 25.87 19.72 34.38 KM Plot
PCPG rs112154518 chr2:241461061 A/G 5.73E-11 174 27.2 20.25 7.2 KM Plot
PCPG rs112190984 chr14:74457478 T/G 3.51E-6 177 25.17 30.93 10.3 KM Plot